Index of run-time parameters with section names

Additional shared libraries, 214, 235, 243, 414, 416, 423, 477, 509, 528
Adiabatic surface temperature, 29

Boundary temperature model
    Box
        Bottom temperature, 139, 162, 176
        Left temperature, 139
        Right temperature, 139
        Top temperature, 139, 162, 176
    Fixed temperature boundary indicators, 135, 139, 162, 176, 210, 260, 276, 295, 475, 536
    List of model names, 139, 162, 176, 219, 260, 276, 414, 416, 423, 453
    Spherical constant
        Inner temperature, 260, 276
        Outer temperature, 260, 276
Boundary velocity model
    Function
        Function constants, 174, 176
        Function expression, 174, 176
        Variable names, 174, 176
    GPlates model
        Data directory, 295
        Interpolation width, 296
        Point one, 296
        Point two, 296
        Time step, 296
        Velocity file name, 295
    Prescribed velocity boundary indicators, 174, 176, 295, 423, 426, 535
    Tangential velocity boundary indicators, 135, 139, 163, 174, 176, 210, 260, 275, 295, 414, 416, 453, 475
    Zero velocity boundary indicators, 219, 260, 275
Burstedde benchmark
    Viscosity parameter, 426

CFL number, 122, 210, 476
Checkpointing
    Steps between checkpoint, 164, 277
Composition solver tolerance, 119
Compositional fields
    Compositional field methods, 209
    Mapped particle properties, 209
    Names of fields, 209, 314
    Number of fields, 180, 209, 219, 239, 314, 453

Dimension, 16, 91, 95, 122, 135, 139, 162, 175, 219, 260, 275, 414, 416, 423, 452, 509
Discretization
    Composition polynomial degree, 120
    Stabilization parameters
        Use artificial viscosity smoothing, 239
    Stokes velocity polynomial degree, 161, 414–416, 423
    Temperature polynomial degree, 120, 161, 239
    Use locally conservative discretization, 226, 414, 416, 423

End time, 91, 122, 139, 175, 219, 260, 275, 414, 416, 423, 452, 476, 509

Formulation
    Formulation, 140
Free surface
    Free surface boundary indicators, 210
    Free surface stabilization theta, 210

Geometry model
    Box
        X extent, 135, 139, 162, 176, 219, 314, 414, 416, 423, 452
        X repetitions, 314
        Y extent, 135, 139, 162, 176, 219, 314, 414, 416, 423, 452
        Z extent, 162, 453
    Model name, 91, 135, 139, 162, 175, 219, 260, 275, 314, 414–416, 423, 452, 474, 532
    Spherical shell
        Inner radius, 260, 275, 474
        Opening angle, 260, 474
        Outer radius, 260, 275, 474
Gravity model
    Model name, 139, 163, 176, 219, 260, 276, 414–416, 423, 426, 453, 475, 534
    Radial constant
        Magnitude, 475
    Vertical
        Magnitude, 139, 157, 163, 219, 453

Heating model
    Adiabatic heating
        Use simplified adiabatic heating, 14
    Exponential decay heating
        Half life, 509
    List of model names, 260, 266, 272, 509
    Model name, 531

Initial composition model
    Function
        Function constants, 383, 393, 453
        Function expression, 180, 196, 220, 239, 315, 383, 393, 453, 509
        Variable names, 180, 196, 219, 239, 315, 383, 393, 453, 509
    Model name, 180, 196, 219, 239, 315, 383, 393, 453, 509
Initial conditions
    Model name, 535
Initial temperature model
    Function
        Function constants, 125, 139, 163, 315
        Function expression, 125, 139, 163, 176, 210, 219, 276, 315, 453, 509
        Variable names, 125, 139, 163, 176, 210, 315, 509
    Model name, 125, 139, 163, 176, 210, 219, 260, 276, 286, 315, 414, 416, 423, 453, 475, 509
    S40RTS perturbation
        Data directory, 286
        Initial condition file name, 286
        Reference temperature, 286
        Remove degree 0 from perturbation, 286
        Spline knots depth file name, 286
        Thermal expansion coefficient in initial temperature scaling, 286
        Vs to density scaling, 286
    Spherical hexagonal perturbation
        Angular mode, 475
        Rotation offset, 475

Linear solver A block tolerance, 119
Linear solver S block tolerance, 119
Linear solver tolerance, 119

Material model
    Composition reaction model
        Density differential for compositional field 1, 197
        Density differential for compositional field 2, 197
        Reaction depth, 197
        Thermal conductivity, 197
        Thermal expansion coefficient, 197
        Viscosity, 197
    Exponential decay
        Half life, 509
    Inclusion
        Viscosity jump, 423
    Latent heat
        Composition viscosity prefactor, 466
        Compressibility, 466
        Corresponding phase for density jump, 466
        Phase transition Clapeyron slopes, 466
        Phase transition density jumps, 466
        Phase transition depths, 466
        Phase transition temperatures, 466
        Phase transition widths, 466
        Reference density, 466
        Reference specific heat, 466
        Reference temperature, 466
        Thermal conductivity, 466
        Thermal expansion coefficient, 466
        Thermal viscosity exponent, 466
        Viscosity, 466
        Viscosity prefactors, 466
    Material averaging, 121, 219, 220
    Model name, 122, 139, 176, 190, 197, 215, 219, 243, 260, 275, 315, 383, 414, 416, 423, 426, 453, 466, 474, 477, 509, 530
    Morency and Doin
        Activation energies, 315
        Activation volume, 315
        Coefficient of yield stress increase with depth, 315
        Cohesive strength of rocks at the surface, 315
        Densities, 315
        Heat capacity, 315
        Minimum strain rate, 315
        Preexponential constant for viscous rheology law, 315
        Reference strain rate, 315
        Reference temperature, 315
        Stress exponents for plastic rheology, 315
        Stress exponents for viscous rheology, 315
        Thermal diffusivity, 315
        Thermal expansivities, 315
    Simple model
        Composition viscosity prefactor, 219
        Density differential for compositional field 1, 190, 219, 383, 453
        Reference density, 122, 140, 190, 219, 243, 453, 474
        Reference specific heat, 140, 474
        Reference temperature, 122, 140, 190, 244, 474
        Thermal conductivity, 140, 176, 190, 243, 474
        Thermal expansion coefficient, 140, 176, 190, 219, 243, 260, 275, 383, 474
        Thermal viscosity exponent, 244
        Viscosity, 123, 140, 176, 190, 219, 243, 260, 275, 383, 453, 474
    Simpler with crust model
        Jump height, 215
        Lower viscosity, 215
        Reference density, 215
        Reference specific heat, 215
        Reference temperature, 215
        Thermal conductivity, 215
        Thermal expansion coefficient, 215
        Upper viscosity, 215
    SolCx
        Viscosity jump, 414
    VoT model
        Reference density, 477
        Reference specific heat, 477
        Reference temperature, 477
        Thermal conductivity, 477
        Thermal expansion coefficient, 477
        Viscosity, 477
Maximum time step, 509
Mesh refinement, 541
    Additional refinement times, 158, 163
    Coarsening fraction, 158
    Initial adaptive refinement, 91, 122, 140, 157, 158, 163, 176, 220, 260, 276, 414, 416, 423, 453
    Initial global refinement, 91, 122, 140, 157, 158, 163, 176, 220, 260, 276, 414–416, 423, 453
    Refinement fraction, 158, 453
    Strategy, 260, 276, 453, 541
    Time steps between mesh refinement, 140, 157, 158, 163, 176, 260, 277

Nonlinear solver scheme, 509
Nullspace removal
    Remove nullspace, 475

Output directory, 91, 92, 116, 122, 139, 175, 200, 219, 260, 275, 414, 416, 423, 452, 476

Point one, 296
Point two, 296
Postprocess
    Depth average
        Output format, 277
        Time between graphical output, 261, 277
    List of postprocessors, 91, 120, 140, 164, 176, 189, 190, 200, 210, 220, 260, 277, 281, 383, 414, 416, 423, 426, 453, 536
    Particles
        Data output format, 200, 208
        Function/Function expression, 204
        Function/Variable names, 204
        Interpolation scheme, 208
        List of particle properties, 204, 208
        Number of particles, 200, 204, 208
        Particle generator name, 208
        Time between data output, 200, 208
    Visualization
        List of output variables, 190, 220, 281, 453, 539
        Number of grouped files, 115, 261, 277, 281
        Output format, 101, 220, 261, 277, 281
        Time between graphical output, 140, 164, 176, 190, 200, 211, 220, 261, 277
Prescribe internal velocities, 235
Prescribed velocities
    Indicator function
        Function expression, 235
        Variable names, 235
    Velocity function
        Function expression, 235
        Variable names, 235
Pressure normalization, 28, 120, 139, 219, 414–416, 423

Resume computation, 116, 122, 164, 476

Solver parameters
    Operator splitting parameters
        Reaction time step, 509
    Stokes solver parameters
        Linear solver tolerance, 426
    Temperature solver tolerance, 140
Start time, 175, 219, 414, 416, 423, 452, 509
Surface pressure, 28, 139

Temperature solver tolerance, 119
Termination criteria, 541

Use operator splitting, 509
Use years in output instead of seconds, 22, 139, 175, 260, 275, 452